Uniemp is divided into four theme nuclei:

Information Technology - Uniemp's network and technology transfer.
Telecommunications - Latin-American Center for Telecommunications Economic Studies (Centro Latino Americano de Estudos da Economia das Telecomunicações - Celaet).
Pharmaceutical Industry - Pharmaceutical Innovation Management Agency (Agência de Gestão de Inovação Farmacêutica - Agif).
Public Management - for partnerships with government agencies.
Other areas - if required, new organizations may be created to develop new programs.